This gives you an overview of what we did in 2020. All the videos are still available in the schedule. The schedule will be updated here, reminders will be posted in #schedule on Slack, including the Zoom links and password. You can even import the schedule in your favorite calendar app for the most up-to-date information. To import the calendar, import this url webcal://school2020.brainhackmtl.org/schedule/index.ics in your calendar. Ping us in the #schedule channel on Slack if you have any question regarding the schedule. The website will always be updated first. Synchronization may take some time in other calendars to happen.
| DATE | TIME | EVENT |
|---|---|---|
| Week 0 - Getting ready | ||
4 Monday May, 2020 | 08:00 - 17:00 | Installation party 💻 During office hours the listed instructor will be active and on-line in the Slack #help-installation channel. If you experience any issues or have any questions while following the installation instructions you can ping them in the #help-installation channel and they will follow up with you. If needed, they will also be available to jump on a Zoom call to debug any issues you may be experiencing (this will potentially require you to permit them remote access to your computer). Note you are more than welcome to post questions to the #help-installation channel during times when no instructor is listed as being available, but it may take more time to receive a response!” |
5 Tuesday May, 2020 | 08:00 - 17:00 | Installation party 💻 Installation office hours with instructors can be found here. |
6 Wednesday May, 2020 | 08:00 - 17:00 | Installation party 💻 Installation office hours with instructors can be found here. |
7 Thursday May, 2020 | 08:00 - 17:00 | Installation party 💻 Installation office hours with instructors can be found here. |
8 Friday May, 2020 | 08:00 - 17:00 | Installation party 💻 Installation office hours with instructors can be found here. |
| Week 1 - Fundamentals of Neuro Data Science | ||
11 Monday May, 2020 | 09:00 - 10:00 | Course introduction 1-Introduction to neuro data science week and 2-Introduction to brainhack school |
| 10:00 - 11:00 | Modern reproducibility problems in the life sciences Neuroscientists increasingly rely on openly-accessible data and on advanced methodological procedures for their investigations. Concurrently, there is a growing concern in the life sciences that many results produced are difficult or even impossible to reproduce, commonly referred to as the “reproducibility crisis.” | 11:00 - 12:00 | Set-up and installation | 12:00 - 13:00 | Lunch Eat together, on your own or don't, but make sure to take a break. Don't forget the | 13:00 - 14:00 | Introduction to the terminal Your terminal will become your best friend by the end of the school! Materials: Presentation is a Jupyter Notebook — Video: Video | 14:00 - 15:00 | Introduction to git and GitHub Git and Github will become you second best friends! |
12 Tuesday May, 2020 | 09:00 - 12:00 | Python for data analysis Data science offers a key set of tools and methods to efficiently analyse, visualize, and interpret neuroscience data Materials: Presentation is a Jupyter Notebook — Video: Video |
| 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 16:30 | Containerization with Docker | 16:30 - 17:30 | Assessment 1 |
13 Wednesday May, 2020 | 09:00 - 10:30 | Standards for project management and organization |
| 10:30 - 12:00 | Tools for project management and organization | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 16:30 | High-performance computing | 17:25 - 18:00 | 30-min yoga class |
14 Thursday May, 2020 | 09:00 - 10:30 | Introduction to data visualization in Python |
| 10:30 - 12:00 | Introduction to classical statistics Materials: Presentation is a Jupyter Notebook — Video: Video | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 16:30 | Introduction to machine learning 1- Introduction to machine learning and 2- Hands-on machine learning tutorial | 16:30 - 17:00 | Feedback for review sessions on Friday | 17:25 - 18:00 | 30-min yoga class |
15 Friday May, 2020 | 09:00 - 10:30 | Fundamentals of deep learning in neuroscience |
| 10:30 - 12:00 | Applications of deep learning in neuroscience | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 14:00 | Advanced machine learning for neuroimaging | 14:00 - 15:00 | Review session 1 | 15:00 - 16:00 | Review session 2 | 16:00 - 17:00 | Assessment 2 |
| Week 2 - Time to think about your project | ||
18 Monday May, 2020 | 08:00 - 17:00 | Quebec Public Holiday Enjoy the holiday! There won't be any teaching happening today. Happy free hacking time !? |
19 Tuesday May, 2020 | 09:00 - 10:00 | Introduction to Week 2 |
| 10:00 - 10:15 | Virtual coffee break | 10:00 - 12:00 | Free hacking | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 14:00 | Parallel sessions - Instructor clinic (group A) and Peer clinic (group B) One-on-one meeting with your assigned instructor (group A) and clinic with fellow participants (group B) | 14:00 - 15:00 | Parallel sessions - Instructor clinic (group B) and Peer clinic (group A) One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:00 - 15:15 | Virtual coffee break | 15:10 - 15:45 | 30-min yoga class | 15:45 - 17:00 | Free hacking |
20 Wednesday May, 2020 | 09:00 - 10:00 | Open data resources by Sebastian Urchs Materials: Slides — Video: Full presentation |
| 10:00 - 10:15 | Virtual coffee break | 10:00 - 12:00 | Free hacking | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 14:00 | Parallel sessions - Instructor clinic (group A) and Peer clinic (group B) One-on-one meeting with your assigned instructor (group A) and clinic with fellow participants (group B) | 14:00 - 15:00 | Parallel sessions - Instructor clinic (group B) and Peer clinic (group A) One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:00 - 15:15 | Virtual coffee break | 15:00 - 17:00 | Free hacking |
21 Thursday May, 2020 | 09:00 - 10:00 | Introduction to magneto and electro encephalography by Karim Jerbi — Video: Video |
| 10:00 - 12:00 | Free hacking | 10:15 - 11:15 | Measuring cortical interactions in EEG, MEG and intracranial EEG by Karim Jerbi — Video: Video | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project presentations - Group A Parallel sessions | 13:00 - 15:00 | Project presentations - Group B Parallel sessions Two | 15:00 - 17:00 | Free hacking | 15:15 - 15:45 | 30-min yoga class | 18:00 - 20:00 | Virtual social (optional) |
22 Friday May, 2020 | 09:00 - 10:00 | Introduction to functional MRI connectivity by Pierre Bellec Participants interested in fMRIprep can watch this video and get in touch with Basile Pinsard on slack if they have questions. |
| 10:00 - 11:00 | Introduction to Brain Parcellations by Pierre Bellec Participants interested in fMRIprep can watch this video and get in touch with Basile Pinsard on slack if they have questions. | 10:00 - 12:00 | Free hacking | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Team-building sessions | 15:00 - 17:00 | Free hacking |
| Week 3 - Time to implement your project | ||
25 Monday May, 2020 | 09:00 - 09:15 | Intro to Week 3 A brief review of our goals and schedule for the week |
| 09:15 - 10:15 | Morning talk: Data visualization How to create awesome data visualizations and videos | 10:30 - 11:00 | Yoga Online yoga class. | 11:00 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:15 - 17:00 | Free hacking Time to get it done! |
26 Tuesday May, 2020 | 09:00 - 10:00 | Morning talk: Containers Understanding containers and how to use them Materials: Jupyter Notebook — Video: Video |
| 10:15 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:15 - 17:00 | Free hacking Time to get it done! |
27 Wednesday May, 2020 | 09:00 - 10:00 | Morning talk: Software Testing and Continuous Integration Why and how to test your software |
| 10:15 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:00 - 15:30 | Yoga Online yoga class. | 15:45 - 17:00 | Free hacking Time to get it done! |
28 Thursday May, 2020 | 09:00 - 10:00 | Morning talk: Software Packaging How to package your code |
| 10:15 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:15 - 18:00 | Free hacking Time to get it done! | 18:00 - 21:00 | Virtual social (optional) |
29 Friday May, 2020 | 09:00 - 10:00 | Morning talk: Writing Scripts in Python How to write scripts |
| 10:00 - 10:15 | Virtual coffee break Informal chit chat | 10:30 - 11:00 | Yoga Online yoga class. | 11:00 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor (group B) and clinic with fellow participants (group A) | 15:15 - 17:00 | Free hacking Time to get it done! |
| Week 4 - Project wrap-up and communication | ||
1 Monday June, 2020 | 09:00 - 09:15 | Introduction to week 4 A review of goals, delivrables and schedule for the week |
| 09:15 - 10:00 | Morning talk: Life post-Brainhack by Liza Levitis | 10:00 - 12:00 | Free hacking Time to get it done! | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor and clinic with fellow participants | 15:00 - 18:00 | Free hacking Time to get it done! |
2 Tuesday June, 2020 | 09:00 - 10:00 | Morning talk: Increasing SNR in science communication by Nikola Stikov |
| 10:00 - 12:00 | Free hacking Time to get it done! | 10:30 - 11:00 | Yoga Online yoga class. | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor and clinic with fellow participants | 15:00 - 18:00 | Free hacking Time to get it done! | 18:00 - 21:00 | Virtual social (optional) |
3 Wednesday June, 2020 | 09:00 - 10:00 | Morning talk: How open source software shaped my academic path by Julia Hunterberg |
| 10:00 - 12:00 | Free hacking Time to get it done! | 10:00 - 10:15 | Virtual coffee break Informal chit chat | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 13:00 - 15:00 | Project clinics One-on-one meeting with your assigned instructor and clinic with fellow participants | 15:00 - 18:00 | Free hacking Time to get it done! |
4 Thursday June, 2020 | 09:00 - 10:00 | Morning talk: Life post-BrainHack by Isabelle Simard |
| 10:00 - 12:00 | Free hacking Time to get it done! | 10:30 - 11:00 | Yoga Online yoga class. | 12:00 - 13:00 | Lunch Don't forget the #snack-club! | 15:00 - 17:00 | Final presentations First session to present your project. |
5 Friday June, 2020 | 09:00 - 10:00 | Final presentations By yourself or in a team, you will present the project you will have worked on. |
| 13:00 - 14:30 | Final presentations By yourself or in a team, you will present the project you will have worked on. | 15:00 - 16:30 | Final presentations By yourself or in a team, you will present the project you will have worked on. | 16:30 - 17:00 | Closing ceremony BYOB. And bring your best hat for the group picture! |
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